Imaging Anatomy: Reading X-ray, CT and MRI

By Dr Richard Miller, MBChB FRCS · Reviewed

Imaging anatomy is the study of normal structures as they appear on radiographs, computed tomography (CT) and magnetic resonance imaging (MRI). Each method shows tissues differently: X-ray and CT by how much radiation a tissue absorbs, MRI by how hydrogen nuclei behave in a magnetic field. Recognising normal appearances is the basis of spotting disease.

Imaging Anatomy · key facts

Definition
Normal anatomy as seen on radiographs, CT, MRI and ultrasound
Radiopaque / radiolucent
Absorbs X-rays, appears white / lets X-rays through, appears dark
Hounsfield unit (HU)
CT density scale: water 0, air about -1000
Windowing
Choosing the HU range displayed to show lung, soft tissue or bone
T1 / T2
MRI weightings: fluid dark on T1, bright on T2
Hyperintense / hyperdense
Brighter than surrounding tissue on MRI / on CT

Plain radiographs

A radiograph is a two-dimensional shadow of X-rays that have passed through the body, and its contrast comes from differences in how much each tissue absorbs. Dense tissues stop more X-rays and appear white (radiopaque); less dense tissues let more through and appear dark (radiolucent). Five basic densities are recognised, from darkest to brightest:

  1. Air (black)
  2. Fat (dark grey)
  3. Soft tissue and fluid (mid grey)
  4. Bone and calcium (white)
  5. Metal and contrast media (brightest white)

An edge is visible only where two different densities meet. This is the basis of the silhouette sign: on a chest radiograph, the right heart border is formed by the right atrium and disappears when the adjacent right middle lobe fills with fluid. The left heart border is formed mainly by the left ventricle, with the left atrial appendage, pulmonary trunk and aortic knuckle above it.

Because a radiograph flattens depth, two views at right angles are needed to locate a structure or fracture. A chest radiograph is ideally taken posteroanterior (PA), with the X-rays entering from behind, which keeps the heart close to the detector and reduces magnification. An anteroposterior (AP) film, used for patients who cannot stand, makes the heart look larger.

Computed tomography (CT)

CT uses a rotating X-ray source and detectors to build cross-sectional images, removing the overlap of plain films. Each voxel is given a density value in Hounsfield units (HU), set so that water is 0 and air about -1000. Fat is negative, soft tissues are positive, and bone is strongly positive.

The eye cannot separate thousands of grey levels, so images are displayed with a window: a chosen centre and width of HU values. A lung window shows airways and vessels in the lungs; a soft tissue window shows organs, muscle and fat; a bone window shows cortical and trabecular detail. Intravenous iodinated contrast brightens vessels and enhancing organs, and scans can be timed to arterial or portal venous phases.

CT is acquired as axial slices and viewed from below, as if standing at the patient's feet, so the patient's right is on the viewer's left and anterior is at the top. Coronal and sagittal images are reconstructed from the same data. CT is fast and widely available, but it gives a higher radiation dose than plain radiographs.

Magnetic resonance imaging (MRI)

MRI uses a strong magnetic field and radiofrequency pulses to generate a signal from hydrogen nuclei (protons), mainly in water and fat. It uses no ionising radiation and gives the best soft-tissue contrast of the three methods. Signal intensity is described as hyperintense (bright), isointense or hypointense (dark).

TissueT1-weightedT2-weighted
FatBrightBright (unless fat-suppressed)
Water, CSF, oedemaDarkBright
Cortical bone, airDarkDark
Flowing bloodUsually dark (flow void)Usually dark (flow void)

T1 images are good for anatomy; T2 images show fluid and so highlight oedema, inflammation and many lesions. Fat-suppressed sequences, such as STIR, make fluid stand out further. Gadolinium-based contrast shortens T1 and brightens enhancing tissue. MRI takes longer than CT, and some implanted devices, ferromagnetic foreign bodies and claustrophobia limit its use.

Ultrasound

Ultrasound forms images from reflected high-frequency sound and is used for superficial structures, solid organs, vessels and pregnancy. Echogenic (hyperechoic) tissues appear bright, fluid is anechoic (black), and air and bone block the beam and cast acoustic shadows. It is safe, portable and dynamic, but it depends on the skill of the operator.

Clinical relevance

The choice of imaging follows the question being asked. Radiographs are first-line for fractures and the chest. CT is used for trauma, acute abdominal problems, staging of cancer and detailed bony anatomy. MRI is preferred for the brain, spinal cord, joints, soft tissues and bone marrow. Knowing the normal anatomy, orientation conventions and appearance of each tissue is what lets a clinician recognise when something is abnormal, and radiological images form part of anatomy assessment at every level of surgical training.

How it is examined

On a cadaveric spotter, in an OSPE and in MRCS Part B anatomy.

  • Start every image question by stating the modality, plane and, for MRI, the weighting: 'this is an axial T2-weighted MRI at the level of L4'. Fluid bright means T2; fluid dark means T1 or CT.
  • On axial CT and MRI, the patient's right is on the viewer's left. Orient using the liver (right) and the aorta (left of midline) before naming anything.
  • Know the chest radiograph borders: right heart border is the right atrium; left border is mainly the left ventricle, with the aortic knuckle and pulmonary trunk above.
  • Expect a follow-up on why a PA chest film is preferred to AP: less cardiac magnification.

Key points

  • Radiographs show five densities: air, fat, soft tissue, bone and metal.
  • Edges are seen only where different densities meet, the basis of the silhouette sign.
  • CT densities are measured in Hounsfield units, with water 0 and air about -1000.
  • Windowing selects the HU range shown to highlight lung, soft tissue or bone.
  • On MRI, fluid is dark on T1 and bright on T2; fat is bright on both unless suppressed.
  • Axial images are viewed from the feet, so the patient's right is on the viewer's left.

Common questions

What is the difference between T1 and T2 MRI?

T1 and T2 are different MRI weightings that make tissues appear differently. On T1-weighted images, fat is bright and water, including cerebrospinal fluid, is dark, which gives clear anatomical detail. On T2-weighted images, water is bright, so fluid, oedema and many diseased tissues stand out. A quick check is to look at a fluid space such as the ventricles or bladder.

What are Hounsfield units?

Hounsfield units are the scale used to express tissue density on CT. The scale is set so that water measures 0 and air about -1000. Fat has negative values, soft tissues and blood have small positive values, and bone has high positive values. Measuring the Hounsfield units of a region helps identify its contents, such as distinguishing fat from fluid or haemorrhage.

Why does bone look white on an X-ray?

Bone looks white on an X-ray because its calcium content absorbs most of the X-ray beam, so few X-rays reach the detector behind it. Tissues that absorb little radiation, such as air in the lungs, let most of the beam through and appear black. Fat and soft tissues fall in between as shades of grey, and metal appears brightest of all.

Which way are CT scans viewed?

Axial CT scans are viewed from below, as if standing at the patient's feet and looking towards the head. The patient's right side therefore appears on the left of the image, and anterior is at the top. The same convention applies to axial MRI. Radiographs are displayed as if facing the patient, so the patient's right is also on the viewer's left.

References

  1. Gray's Anatomy for Students. Drake RL, Vogl AW, Mitchell AWM. Elsevier.
  2. Moore's Clinically Oriented Anatomy. Moore KL, Dalley AF, Agur AMR. Wolters Kluwer. 9th edition, 2022.
  3. Gray's Anatomy: The Anatomical Basis of Clinical Practice. Standring S (ed). Elsevier. 42nd edition, 2020.

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