Embryology Terms: Germ Layers, Somites and Key Stages

By Dr Richard Miller, MBChB FRCS · Reviewed

Embryological terms describe how a single fertilised cell becomes an organised body, and they explain much of adult anatomy. The key stages are cleavage, implantation, gastrulation into three germ layers (ectoderm, mesoderm and endoderm), neurulation and folding, with most organs forming between weeks 3 and 8.

Embryology Terms · key facts

Definition
Terms for the stages and tissues of prenatal development
Germ layers
Ectoderm, mesoderm, endoderm, formed at gastrulation in week 3
Embryonic period
Fertilisation to end of week 8; organs form
Fetal period
Week 9 to birth; growth and maturation
Somite
Block of paraxial mesoderm forming sclerotome, myotome and dermatome
Neural crest
Cells from the edges of the neural folds that migrate widely

Early stages: zygote to bilaminar disc

Development begins at fertilisation, when a sperm and an oocyte fuse to form the zygote. The key early terms are:

  • Cleavage: rapid mitotic divisions of the zygote without overall growth, producing smaller cells called blastomeres.
  • Morula: a solid ball of blastomeres.
  • Blastocyst: a hollow sphere with a fluid-filled cavity. Its inner cell mass (embryoblast) forms the embryo; its outer layer (trophoblast) forms much of the placenta.
  • Implantation: the blastocyst embeds in the endometrium, beginning at the end of the first week.
  • Bilaminar disc: in week 2 the inner cell mass becomes a flat disc of two layers, the epiblast and the hypoblast.

Gastrulation and the germ layers

Gastrulation, in week 3, converts the bilaminar disc into a trilaminar disc with three germ layers. A groove called the primitive streak forms on the epiblast. Epiblast cells migrate through it: some replace the hypoblast as endoderm, some spread between the layers as mesoderm, and those remaining on the surface become ectoderm. The notochord, a rod of cells in the midline, forms at the same time. It induces the overlying ectoderm to form the nervous system, and its remnant in the adult is the nucleus pulposus of the intervertebral discs.

Germ layerMain derivatives
EctodermEpidermis, hair, nails, lens, enamel, anterior pituitary; the nervous system (via the neural tube); neural crest derivatives
MesodermSkeletal, cardiac and smooth muscle; bone and cartilage of the trunk and limbs; dermis; heart, vessels and blood; kidneys and gonads; spleen; adrenal cortex; serous membranes
EndodermEpithelial lining of the gut and respiratory tract; liver and pancreas; thyroid follicular cells; parathyroid glands; thymic epithelium; most of the bladder epithelium

Neurulation, somites and folding

Neurulation forms the neural tube, the precursor of the brain and spinal cord. The ectoderm over the notochord thickens as the neural plate, its edges rise as neural folds, and the folds fuse in the midline to form a tube. The open ends, the cranial and caudal neuropores, close during week 4. Neural crest cells break away from the edges of the folds and migrate to form sensory and autonomic ganglia, Schwann cells, melanocytes, the adrenal medulla and much of the skeleton and connective tissue of the face.

The mesoderm on each side of the notochord divides into three parts:

  • Paraxial mesoderm forms paired somites. Each somite divides into a sclerotome (vertebrae and ribs), a myotome (segmental muscle) and a dermatome (dermis of the back). The segmental origin of these tissues explains why spinal nerves supply dermatomes and myotomes.
  • Intermediate mesoderm forms the kidneys, gonads and their ducts.
  • Lateral plate mesoderm splits into a somatic layer (body wall, limb bones and connective tissue) and a splanchnic layer (gut wall muscle and connective tissue, heart). The space between them becomes the body cavities.

Folding in week 4, both head to tail and side to side, turns the flat disc into a cylinder. It draws the endoderm into the gut tube, divided into foregut, midgut and hindgut, and supplied in the adult by the coeliac trunk, superior mesenteric artery and inferior mesenteric artery respectively.

Terms for developmental anomalies

Precise terms describe how development can go wrong.

TermMeaning
AgenesisComplete absence of an organ because its primordium never formed
AplasiaPrimordium present but the organ fails to develop
HypoplasiaUnderdevelopment, leaving the organ small
AtresiaAbsence or closure of a normal opening or lumen
StenosisNarrowing of a lumen
EctopiaAn organ in an abnormal position
TeratogenAn agent that causes a congenital anomaly

The embryonic period is the most sensitive time for teratogens because the organs are forming. Neural tube defects, such as spina bifida and anencephaly, result from failure of the neural tube to close, and folic acid supplementation before and in early pregnancy reduces their risk.

How it is examined

On a cadaveric spotter, in an OSPE and in MRCS Part B anatomy.

  • Examiners like germ-layer origin questions: the nucleus pulposus from the notochord, the adrenal medulla from neural crest and the adrenal cortex from mesoderm.
  • Link embryology to adult anatomy: somites explain dermatomes and myotomes, and the foregut, midgut and hindgut explain the coeliac, superior mesenteric and inferior mesenteric arterial territories and referred pain.
  • Be precise about agenesis, aplasia and hypoplasia; they are not interchangeable.
  • Know the timing: gastrulation in week 3, neural tube closure and folding in week 4, and the embryonic period ending at week 8.

Key points

  • The zygote cleaves into a morula, then a blastocyst with an inner cell mass and trophoblast.
  • Gastrulation in week 3 forms ectoderm, mesoderm and endoderm.
  • The notochord induces the neural tube and persists as the nucleus pulposus.
  • Somites form sclerotome, myotome and dermatome, the basis of segmental innervation.
  • Folding in week 4 creates the foregut, midgut and hindgut.
  • Organs form in the embryonic period, the window of greatest teratogen sensitivity.

Common questions

What are the three germ layers?

The three germ layers are ectoderm, mesoderm and endoderm, formed during gastrulation in the third week of development. Ectoderm gives rise to the epidermis and nervous system. Mesoderm forms muscle, bone, connective tissue, the heart, blood vessels, kidneys and gonads. Endoderm forms the epithelial lining of the gut and airways and the glands that develop from them, such as the liver and pancreas.

What is the difference between the embryonic and fetal periods?

The embryonic period runs from fertilisation to the end of the eighth week, during which all the major organs and body systems form. The fetal period runs from the ninth week until birth and is mainly one of growth and maturation of structures already present. Most major congenital anomalies therefore arise during the embryonic period, when tissues are most sensitive to teratogens.

What does neural crest form?

Neural crest cells arise from the edges of the neural folds as the neural tube closes, and they migrate throughout the embryo. They form the sensory ganglia of spinal and cranial nerves, autonomic ganglia, Schwann cells, melanocytes, the adrenal medulla and much of the bone, cartilage and connective tissue of the face and neck. They also contribute to the outflow tract of the heart.

What is a somite?

A somite is one of the paired blocks of paraxial mesoderm that form on either side of the neural tube and notochord from week 3. Each somite divides into a sclerotome, which forms vertebrae and ribs; a myotome, which forms segmental muscle; and a dermatome, which forms the dermis of the back. This segmental origin underlies the adult pattern of dermatomes and myotomes.

References

  1. Gray's Anatomy: The Anatomical Basis of Clinical Practice. Standring S (ed). Elsevier. 42nd edition, 2020.
  2. Moore's Clinically Oriented Anatomy. Moore KL, Dalley AF, Agur AMR. Wolters Kluwer. 9th edition, 2022.
  3. Gray's Anatomy for Students. Drake RL, Vogl AW, Mitchell AWM. Elsevier.

Read next

Test yourself

Name it on a real dissection, against the clock.

Timed spot tests on cadaveric prosections, marked structure by structure, with the ones you miss brought back for revision.